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| Foodborne pathogens & whole genome sequencing : impact on public health protection/ Joint conférence Paris 26-28 March 2019 |
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| Programme | ||||
| 8:30 | Registration |
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| 9:00 | SESSION 2 - Genomics for foodborne pathogens characterization and outbreak investigation Genomic characterization of Clostridium perfringens strains involved in food poisoning outbreaks in France 2013-2017 Foodborne Outbreaks Investigation and Whole Genome Sequences Analysis In Korea MFDS |
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| 10:45 | Coffee break |
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| 11:15 | SESSION 3 - Quantitative risk assessment modelisation and source attribution in the genomic era CHAIRS: Mirko ROSSI, European Food Safety Authority (EFSA), Italy and Gilles SALVAT, ANSES, France KEYNOTE SPEAKER: Towards ‘next-generation’ source attribution and microbial risk assessment of foodborne pathogens Lapo MUGHINI-GRAS, RIVM, the Netherlands The use of Whole Genome Sequencing in risk assessment: Application to the cold smoked salmon-related listeriosis risk model Laurent GUILLIER, ANSES, Food Safety Laboratory, Unit Salmonella and Listeria, France Campylobacter: recent knowledge using genomics and metagenomics Marianne CHEMALY, ANSES, Laboratory of Ploufragan-Plouzané-Niort, Unit of Hygiene and Quality of Poultry and Pork Products, France RAKIP: Resources for harmonized annotation and efficient exchange of risk assessment models Matthias FILTER, Federal Institute for Risk Assessment (BfR), Germany |
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| 13:00 | Free time for lunch | |||
| 14:30 |
SESSION 4 - Pipelines and workflows for WGS data analysis CHAIRS: Soohwan SUH, National Institute of Food and Drug Safety Evaluation (NIFDS), Ministry of Food and Drug Safety, South Korea and Eric BROWN, Center for Food Safety and Applied Nutrition, Food and Drug Administration, USA KEYNOTE SPEAKER: Integration of genomics in outbreak detection and investigation of foodborne pathogens: state-of-the-art and challenges Mirko ROSSI, European Food Safety Authority (EFSA), Italy PathoLive - Pathogen detection while sequencing Simon TAUSCH, Federal Institute for Risk Assessment (BfR), Germany Adaptation to animal sources of Salmonella enterica subsp. enterica deciphered by Genome Wide, Association Study and Gene Ontology Enrichment Analysis at the pangenomic scale Nicolas RADOMSKI, ANSES, Food Safety Laboratory, Genome Analysis Modelling Risk (GAMeR), France First steps towards incorporation of whole-genome sequencing data in exposure assessment: Machine Learning and Network-Diffusion approaches Pimlapas LEEKITCHAROENPHON, Technical University of Denmark, National Food Institute, DTU, Denmark |
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| 16:15 | Coffee break | |||
| 16:45 | SESSION 5 - Antimicrobial resistance CHAIRS: Jean-Yves MADEC, ANSES, France and Valeria BORTOLAIA, Technical University of Denmark, National Food Institute, DTU, Denmark KEYNOTE SPEAKER: The presence and future in antimicrobial resistance surveillance Rene Sjøgren HENDRIKSEN, Technical University of Denmark, National Food Institute, DTU, Denmark Plasmid-mediated colistin resistance in German Salmonella enterica strains isolated from livestock, food and the environment Maria BOROWIAK, Federal Institute for Risk Assessment (BfR), Germany One Health Approach on AMR surveillance in Korea Soohwan SUH, National Institute of Food and Drug Safety Evaluation (NIFDS), Ministry of Food and Drug Safety, South Korea WGS and antimicrobial resistance Isabelle KEMPF, ANSES, Ploufragan-Plouzané-Niort Laboratory, France |
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| 18:15 | Cocktail (until 20:00) | |||
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| Copyright © 2018 Ptolémée. |